Analyzing brain slice images produced by slide scanner

Experimental Techniques
1

I want to make statistics for images I have. I want to count the number of colocalizations ex: NeuN signals and cFos signals. Its hard to do manually by Fiji ImageJ. Is there any software or method to do it automaically or simply?

2

Check out https://www.cellpose.org/ for segmentation and QuPath
https://qupath.github.io/

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